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1

Choosing the right label for single-molecule tracking in live bacteria: side-by-side comparison of photoactivatable fluorescent protein and Halo tag dyes

Banaz, Nehir, Mäkelä, Jarno, Uphoff, Stephan

Journal:

Journal of Physics D Applied Physics

Year:

2019

Language:

english

File:

PDF, 8.90 MB

english, 2019

2

An elementary quantum network of single atoms in optical cavities

Ritter, Stephan, Nölleke, Christian, Hahn, Carolin, Reiserer, Andreas, Neuzner, Andreas, Uphoff, Manuel, Mücke, Martin, Figueroa, Eden, Bochmann, Joerg, Rempe, Gerhard

Journal:

Year:

2012

Language:

english

File:

PDF, 2.09 MB

english, 2012

3

DAOSTORM: an algorithm for high- density super-resolution microscopy

Holden, Seamus J, Uphoff, Stephan, Kapanidis, Achillefs N

Journal:

Year:

2011

Language:

english

File:

PDF, 327 KB

english, 2011

4

Single-Molecule Analysis of Bacterial DNA Repair and Mutagenesis

Uphoff, Stephan, Sherratt, David J.

Journal:

Annual Review of Biophysics

Year:

2017

Language:

english

File:

PDF, 1.86 MB

english, 2017

5

Filming flagella and pili in action

Lagage, Valentine, Uphoff*, Stephan

Journal:

Nature Reviews Microbiology

Year:

2018

Language:

english

File:

PDF, 560 KB

english, 2018

6

Improved Temporal Resolution and Linked Hidden Markov Modeling for Switchable Single-Molecule FRET

Stephan Uphoff, Kristofer Gryte, Geraint Evans, Dr. Achillefs N. Kapanidis

Journal:

Year:

2011

Language:

english

File:

PDF, 1.06 MB

english, 2011

7

Cover Picture: Improved Temporal Resolution and Linked Hidden Markov Modeling for Switchable Single-Molecule FRET (ChemPhysChem 3/2011)

Stephan Uphoff, Kristofer Gryte, Geraint Evans, Dr. Achillefs N. Kapanidis

Journal:

Year:

2011

Language:

english

File:

PDF, 991 KB

english, 2011

8

A single-atom quantum memory

Specht, Holger P., Nölleke, Christian, Reiserer, Andreas, Uphoff, Manuel, Figueroa, Eden, Ritter, Stephan, Rempe, Gerhard

Journal:

Year:

2011

Language:

english

File:

PDF, 545 KB

english, 2011

9

Monitoring multiple distances within a single molecule using switchable FRET

Uphoff, Stephan, Holden, Seamus J, Le Reste, Ludovic, Periz, Javier, van de Linde, Sebastian, Heilemann, Mike, Kapanidis, Achillefs N

Journal:

Year:

2010

Language:

english

File:

PDF, 1.30 MB

english, 2010

10

Defining the Limits of Single-Molecule FRET Resolution in TIRF Microscopy

Holden, Seamus J., Uphoff, Stephan, Hohlbein, Johannes, Yadin, David, Le Reste, Ludovic, Britton, Oliver J., Kapanidis, Achillefs N.

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 681 KB

english, 2010

11

Single-Molecule DNA Repair in Live Bacteria

Uphoff, Stephan, Reyes-Lamothe, Rodrigo, Sherratt, David J., Kapanidis, Achillefs N.

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 37 KB

english, 2012

12

Self-assessment examination of the American Academy of Dermatology

Crawford, Robert, Torella, Joseph P., Aigrain, Louise, Plochowietz, Anne, Gryte, Kristofer, Uphoff, Stephan, Kapanidis, Achillefs N.

Journal:

Journal of the American Academy of Dermatology

Year:

1984

Language:

english

File:

PDF, 3.91 MB

english, 1984

13

Long-Lived Intracellular Single-Molecule Fluorescence Using Electroporated Molecules

Crawford, Robert, Torella, Joseph P., Aigrain, Louise, Plochowietz, Anne, Gryte, Kristofer, Uphoff, Stephan, Kapanidis, Achillefs N.

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 2.02 MB

english, 2013

14

Internalization of Fluorescent Biomolecules for Long-Lived Single-Molecule Observation in Living Bacteria

Crawford, Robert, Aigrain, Louise, Plochowietz, Anne, Torella, Joseph P., Uphoff, Stephan, Kapanidis, Achillefs N.

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 37 KB

english, 2013

15

Warning signs of stroke

Uphoff, Stephan, Holden, Seamus, Le Reste, Ludovic, van de Linde, Sebastian, Heilemann, Mike, Kapanidis, Achillefs N.

Journal:

The American Journal of Emergency Medicine

Year:

1989

Language:

english

File:

PDF, 137 KB

english, 1989

16

Measuring Multiple Distances within a Single Molecule using Switchable FRET

Uphoff, Stephan, Holden, Seamus, Le Reste, Ludovic, van de Linde, Sebastian, Heilemann, Mike, Kapanidis, Achillefs N.

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 34 KB

english, 2010

17

TIRF-Based FRET with One Base-Pair Resolution

Holden, Seamus J., Uphoff, Stephan, Yadin, David, Hohlbein, Johannes, Le Reste, Ludovic, Britton, Oliver J., Kapanidis, Achillefs N.

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 40 KB

english, 2010

18

Regime-Changing Hidden Markov Modeling and Statistical Analysis for Complex Single-Molecule Time Series

Gryte, Kristofer, Wardrope, Alistair, Evans, Geraint, Uphoff, Stephan, Le Reste, Ludovic, Kapanidis, Achillefs N.

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 60 KB

english, 2012

19

Studying the organization of DNA repair by single-cell and single-molecule imaging

Uphoff, Stephan, Kapanidis, Achillefs N.

Journal:

Year:

2014

Language:

english

File:

PDF, 2.22 MB

english, 2014

20

Super-Resolution Imaging of Transcription in Live Bacterial Cells

Stracy, Mathew, Uphoff, Stephan, Garza de Leon, Federico, Kapanidis, Achillefs

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 44 KB

english, 2014

21

Applications of lipid-coated microbubble ultrasonic contrast to tumor therapy

Ho, Shih-Yieh, Lange, Stephan C., Uphoff, Dean F., D'Arrigo, Joseph S., Simon, Richard H.

Journal:

Ultrasound in Medicine & Biology

Year:

1993

Language:

english

File:

PDF, 290 KB

english, 1993

22

In vivo single-molecule imaging of bacterial DNA replication, transcription, and repair

Stracy, Mathew, Uphoff, Stephan, Garza de Leon, Federico, Kapanidis, Achillefs N.

Journal:

Year:

2014

Language:

english

File:

PDF, 2.02 MB

english, 2014

23

[IEEE 2013 Conference on Lasers & Electro-Optics Europe & International Quantum Electronics Conference CLEO EUROPE/IQEC - Munich, Germany (2013.05.12-2013.05.16)] 2013 Conference on Lasers & Electro-Optics Europe & International Quantum Electronics Conference CLEO EUROPE/IQEC - Quantum networks based on single atoms in optical cavities

Ritter, Stephan, Nolleke, Christian, Hahn, Carolin, Reiserer, Andreas, Neuzner, Andreas, Uphoff, Manuel, Mucke, Martin, Figueroa, Eden, Bochmann, Joerg, Rempe, Gerhard

Year:

2013

Language:

english

File:

PDF, 368 KB

english, 2013

24

Frequency splitting of polarization eigenmodes in microscopic Fabry–Perot cavities

Uphoff, Manuel, Brekenfeld, Manuel, Rempe, Gerhard, Ritter, Stephan

Journal:

New Journal of Physics

Year:

2015

Language:

english

File:

PDF, 1.69 MB

english, 2015

25

Live-cell superresolution microscopy reveals the organization of RNA polymerase in the bacterial nucleoid

Stracy, Mathew, Lesterlin, Christian, Garza de Leon, Federico, Uphoff, Stephan, Zawadzki, Pawel, Kapanidis, Achillefs N.

Journal:

Proceedings of the National Academy of Sciences

Year:

2015

Language:

english

File:

PDF, 2.26 MB

english, 2015

26

Corrigendum to “In vivo single-molecule imaging of bacterial DNA replication, transcription, and repair” [FEBS Lett. 588 (19) (2014) 3585–3594]

Stracy, Mathew, Uphoff, Stephan, Garza de Leon, Federico, Kapanidis, Achillefs N.

Journal:

Year:

2015

Language:

english

File:

PDF, 215 KB

english, 2015

27

Single-Molecule Imaging of Transcription, Chromosome Organization, and DNA Repair in Live Bacteria

Stracy, Mathew, Lesterlin, Christian, Uphoff, Stephan, Zawadzki, Pawel, Kapanidis, Achillefs N.

Journal:

Biophysical Journal

Year:

2016

Language:

english

File:

PDF, 59 KB

english, 2016

28

An integrated quantum repeater at telecom wavelength with single atoms in optical fiber cavities

Uphoff, Manuel, Brekenfeld, Manuel, Rempe, Gerhard, Ritter, Stephan

Journal:

Applied Physics B: Lasers and Optics

Year:

2016

Language:

english

File:

PDF, 1.11 MB

english, 2016

29

Single-molecule imaging of UvrA and UvrB recruitment to DNA lesions in living Escherichia coli

Stracy, Mathew, Jaciuk, Marcin, Uphoff, Stephan, Kapanidis, Achillefs N., Nowotny, Marcin, Sherratt, David J., Zawadzki, Pawel

Journal:

Nature Communications

Year:

2016

Language:

english

File:

PDF, 1.18 MB

english, 2016

30

Imaging cellular structures in super-resolution with SIM, STED and Localisation Microscopy: A practical comparison

Wegel, Eva, Göhler, Antonia, Lagerholm, B. Christoffer, Wainman, Alan, Uphoff, Stephan, Kaufmann, Rainer, Dobbie, Ian M.

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 2.40 MB

english, 2016

31

Visualizing Protein-DNA Interactions in Live Bacterial Cells Using Photoactivated Single-molecule Tracking

Uphoff, Stephan, Sherratt, David J., Kapanidis, Achillefs N.

Journal:

Journal of Visualized Experiments

Year:

2014

Language:

english

File:

PDF, 7.47 MB

english, 2014

32

Editorial overview: The new microscopy

Briegel, Ariane, Uphoff, Stephan

Journal:

Current Opinion in Microbiology

Year:

2018

Language:

english

File:

PDF, 275 KB

english, 2018

33

Understanding Protein Mobility in Bacteria by Tracking Single Molecules

Kapanidis, Achillefs N., Uphoff, Stephan, Stracy, Mathew

Journal:

Journal of Molecular Biology

Year:

2018

Language:

english

File:

PDF, 1.27 MB

english, 2018

34

Real-time dynamics of mutagenesis reveal the chronology of DNA repair and damage tolerance responses in single cells

Uphoff, Stephan

Journal:

Proceedings of the National Academy of Sciences

Year:

2018

Language:

english

File:

PDF, 1.13 MB

english, 2018

35

Scc2/Nipbl hops between chromosomal cohesin rings after loading

Rhodes, James, Mazza, Davide, Nasmyth, Kim, Uphoff, Stephan

Journal:

Year:

2017

Language:

english

File:

PDF, 3.37 MB

english, 2017

36

RBFOX2 and alternative splicing in B-cell lymphoma

Quentmeier, Hilmar, Pommerenke, Claudia, Bernhart, Stephan H., Dirks, Wilhelm G., Hauer, Vivien, Hoffmann, Steve, Nagel, Stefan, Siebert, Reiner, Uphoff, Cord C., Zaborski, Margarete, Drexler, Hans G.

Journal:

Blood Cancer Journal

Year:

2018

Language:

english

File:

PDF, 481 KB

english, 2018

37

A Quantitative Model Explains Single-Cell Dynamics of the Adaptive Response in Escherichia coli

Uphoff, Stephan

Journal:

Biophysical Journal

Year:

2019

Language:

english

File:

PDF, 1.55 MB

english, 2019

38

Pulses and delays, anticipation and memory: Seeing bacterial stress responses from a single-cell perspective

Lagage, Valentine, Uphoff, Stephan

Journal:

FEMS Microbiology Reviews

Year:

2020

File:

PDF, 857 KB

2020

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